IL_5ZEB_082

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAA*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_082 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1463

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5ZEB|1|A|U|2081
5ZEB|1|A|U|2082
5ZEB|1|A|A|2083
5ZEB|1|A|A|2084
*
5ZEB|1|A|U|2098
5ZEB|1|A|G|2099
5ZEB|1|A|A|2100
5ZEB|1|A|A|2101
5ZEB|1|A|G|2102

Current chains

Chain A

23S rRNA

Nearby chains