IL_5ZEB_084
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5ZEB|1|A|A|2162, 5ZEB|1|A|U|2168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ZEB_084 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.152
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5ZEB|1|A|C|2158
5ZEB|1|A|G|2159
5ZEB|1|A|A|2160
5ZEB|1|A|A|2161
5ZEB|1|A|A|2162
5ZEB|1|A|U|2163
5ZEB|1|A|U|2164
5ZEB|1|A|C|2165
5ZEB|1|A|C|2166
5ZEB|1|A|U|2167
5ZEB|1|A|U|2168
5ZEB|1|A|G|2169
*
5ZEB|1|A|C|2185
5ZEB|1|A|C|2186
5ZEB|1|A|U|2187
5ZEB|1|A|G|2188
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- Conserved domain protein
Coloring options: