IL_5ZEB_097

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

5ZEB|1|A|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_097 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2625

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

5ZEB|1|A|C|2625
5ZEB|1|A|U|2626
5ZEB|1|A|C|2627
*
5ZEB|1|A|G|2638
5ZEB|1|A|G|2639

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L33 1

Chain 6

50S ribosomal protein L35

Chain M

50S ribosomal protein L15