IL_5ZEB_101

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5ZEB|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_101 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1439

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5ZEB|1|A|A|2683
5ZEB|1|A|U|2684
5ZEB|1|A|C|2685
*
5ZEB|1|A|G|2713
5ZEB|1|A|G|2714
5ZEB|1|A|U|2715
5ZEB|1|A|U|2716
5ZEB|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

Uncharacterized protein bL37

Chain N

50S ribosomal protein L16