IL_5ZEB_106

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5ZEB|1|A|A|2796, 5ZEB|1|A|C|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_106 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.0793

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

5ZEB|1|A|C|2736
5ZEB|1|A|G|2737
*
5ZEB|1|A|C|2795
5ZEB|1|A|A|2796
5ZEB|1|A|C|2797
5ZEB|1|A|G|2798

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13