IL_5ZEB_116

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_116 not in the Motif Atlas

Homologous match to IL_7A0S_100

Geometric discrepancy: 0.291

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5ZEB|1|A|G|3064
5ZEB|1|A|A|3065
5ZEB|1|A|C|3066
*
5ZEB|1|A|G|3092
5ZEB|1|A|A|3093
5ZEB|1|A|A|3094
5ZEB|1|A|C|3095

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19