IL_5ZEB_126

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

5ZEB|1|a|G|68, 5ZEB|1|a|A|69

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_126 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.1387

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

5ZEB|1|a|C|67
5ZEB|1|a|G|68
5ZEB|1|a|A|69
5ZEB|1|a|A|70
*
5ZEB|1|a|U|99
5ZEB|1|a|G|100

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20