IL_5ZEB_140

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

5ZEB|1|a|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_140 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1491

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5ZEB|1|a|G|409
5ZEB|1|a|G|410
5ZEB|1|a|A|411
5ZEB|1|a|U|412
5ZEB|1|a|G|413
5ZEB|1|a|A|414
5ZEB|1|a|C|415
5ZEB|1|a|G|416
*
5ZEB|1|a|U|427
5ZEB|1|a|G|428
5ZEB|1|a|U|429
5ZEB|1|a|A|430
5ZEB|1|a|A|431
5ZEB|1|a|A|432
5ZEB|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4