IL_5ZEB_195

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_195 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2199

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5ZEB|1|A|U|2068
5ZEB|1|A|U|2069
5ZEB|1|A|A|2070
5ZEB|1|A|A|2071
5ZEB|1|A|G|2072
*
5ZEB|1|A|U|2111
5ZEB|1|A|U|2112
5ZEB|1|A|A|2113
5ZEB|1|A|A|2114
5ZEB|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2