IL_5ZEB_197

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUACG*CCGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_197 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3821

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5ZEB|1|B|U|2
5ZEB|1|B|U|3
5ZEB|1|B|A|4
5ZEB|1|B|C|5
5ZEB|1|B|G|6
*
5ZEB|1|B|C|111
5ZEB|1|B|C|112
5ZEB|1|B|G|113
5ZEB|1|B|A|114
5ZEB|1|B|A|115

Current chains

Chain B

5S rRNA

Nearby chains

Chain P

50S ribosomal protein L18