IL_5ZEG_007

3D structure

PDB id

5ZEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAG*C(1MA)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEG_007 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1569

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

5ZEG|1|C|G|16
5ZEG|1|C|A|17
5ZEG|1|C|A|18
5ZEG|1|C|G|19
*
5ZEG|1|C|C|7||||2_555
5ZEG|1|C|1MA|8||||2_555
5ZEG|1|C|C|9||||2_555

Current chains

Chain C

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains