IL_5ZEM_004

3D structure

PDB id

5ZEM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEM_004 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1028

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5ZEM|1|A|G|19
5ZEM|1|A|U|20
5ZEM|1|A|C|21
*
5ZEM|1|B|G|28
5ZEM|1|B|U|29
5ZEM|1|B|C|30

Current chains

Chain A

RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Chain B

RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains