IL_5ZEP_006

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_006 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1132

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5ZEP|1|A|G|187
5ZEP|1|A|G|188
5ZEP|1|A|A|189
5ZEP|1|A|A|190
5ZEP|1|A|G|191
5ZEP|1|A|U|192
5ZEP|1|A|G|193
*
5ZEP|1|A|C|200
5ZEP|1|A|U|201
5ZEP|1|A|C|202
5ZEP|1|A|A|203
5ZEP|1|A|G|204
5ZEP|1|A|U|205
5ZEP|1|A|A|206
5ZEP|1|A|C|207

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28