IL_5ZEP_018

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*UC

Length

5 nucleotides

Bulged bases

5ZEP|1|A|G|684

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_018 not in the Motif Atlas

Homologous match to IL_7A0S_012

Geometric discrepancy: 0.5998

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5ZEP|1|A|G|683
5ZEP|1|A|G|684
5ZEP|1|A|G|685
*
5ZEP|1|A|U|780
5ZEP|1|A|C|781

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15