IL_5ZEP_032

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

5ZEP|1|A|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_032 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1469

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

5ZEP|1|A|G|979
5ZEP|1|A|C|980
5ZEP|1|A|U|981
5ZEP|1|A|A|982
5ZEP|1|A|C|983
5ZEP|1|A|U|984
*
5ZEP|1|A|A|1024
5ZEP|1|A|A|1025
5ZEP|1|A|A|1026
5ZEP|1|A|C|1027

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16