IL_5ZEP_039

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_039 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.1008

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5ZEP|1|A|C|1122
5ZEP|1|A|C|1123
5ZEP|1|A|C|1124
5ZEP|1|A|C|1125
5ZEP|1|A|U|1126
5ZEP|1|A|A|1127
5ZEP|1|A|A|1128
5ZEP|1|A|G|1129
*
5ZEP|1|A|C|1269
5ZEP|1|A|G|1270

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Uncharacterized protein

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20