IL_5ZEP_048

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

5ZEP|1|A|G|1363

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_048 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1275

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5ZEP|1|A|C|1311
5ZEP|1|A|G|1312
5ZEP|1|A|U|1313
*
5ZEP|1|A|A|1362
5ZEP|1|A|G|1363
5ZEP|1|A|U|1364
5ZEP|1|A|G|1365

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain R

50S ribosomal protein L20