IL_5ZEP_055

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_055 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5ZEP|1|A|C|1472
5ZEP|1|A|G|1473
5ZEP|1|A|A|1474
5ZEP|1|A|G|1475
5ZEP|1|A|G|1476
*
5ZEP|1|A|C|1485
5ZEP|1|A|G|1486
5ZEP|1|A|U|1487
5ZEP|1|A|A|1488
5ZEP|1|A|G|1489

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain Y

50S ribosomal protein L28