IL_5ZEP_056

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_056 not in the Motif Atlas

Geometric match to IL_4V9F_077

Geometric discrepancy: 0.2584

The information below is about IL_4V9F_077

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5ZEP|1|A|U|1529
5ZEP|1|A|G|1530
5ZEP|1|A|C|1531
*
5ZEP|1|A|G|1804
5ZEP|1|A|G|1805
5ZEP|1|A|A|1806

Current chains

Chain A

23S rRNA

Nearby chains