IL_5ZEP_064

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_064 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3667

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5ZEP|1|A|C|1694
5ZEP|1|A|U|1695
5ZEP|1|A|G|1696
5ZEP|1|A|U|1697
5ZEP|1|A|A|1698
5ZEP|1|A|G|1699
*
5ZEP|1|A|U|1735
5ZEP|1|A|G|1736
5ZEP|1|A|A|1737
5ZEP|1|A|G|1738
5ZEP|1|A|A|1739
5ZEP|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains