IL_5ZEP_072
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 5ZEP|1|A|G|1917
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ZEP_072 not in the Motif Atlas
- Homologous match to IL_7RQB_068
- Geometric discrepancy: 0.1013
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5ZEP|1|A|C|1904
5ZEP|1|A|G|1905
5ZEP|1|A|U|1906
5ZEP|1|A|A|1907
5ZEP|1|A|A|1908
5ZEP|1|A|C|1909
*
5ZEP|1|A|G|1914
5ZEP|1|A|G|1915
5ZEP|1|A|A|1916
5ZEP|1|A|G|1917
5ZEP|1|A|A|1918
5ZEP|1|A|A|1919
5ZEP|1|A|G|1920
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- Conserved domain protein
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