IL_5ZEP_081

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_081 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2825

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZEP|1|A|A|2073
5ZEP|1|A|G|2074
5ZEP|1|A|G|2075
5ZEP|1|A|A|2076
5ZEP|1|A|C|2077
5ZEP|1|A|C|2078
*
5ZEP|1|A|G|2105
5ZEP|1|A|A|2106
5ZEP|1|A|G|2107
5ZEP|1|A|A|2108
5ZEP|1|A|A|2109
5ZEP|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains

Chain w

Transfer RNA; tRNA