IL_5ZEP_101

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5ZEP|1|A|U|2715

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_101 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.144

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5ZEP|1|A|A|2683
5ZEP|1|A|U|2684
5ZEP|1|A|C|2685
*
5ZEP|1|A|G|2713
5ZEP|1|A|G|2714
5ZEP|1|A|U|2715
5ZEP|1|A|U|2716
5ZEP|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Uncharacterized protein

Chain N

50S ribosomal protein L16