IL_5ZEP_102

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_102 not in the Motif Atlas

Geometric match to IL_3BNT_006

Geometric discrepancy: 0.1342

The information below is about IL_3BNT_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

5ZEP|1|A|C|2685
5ZEP|1|A|U|2686
5ZEP|1|A|U|2687
*
5ZEP|1|A|A|2711
5ZEP|1|A|U|2712
5ZEP|1|A|G|2713

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Uncharacterized protein

Chain N

50S ribosomal protein L16