IL_5ZEP_121

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_121 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2255

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5ZEP|1|B|C|31
5ZEP|1|B|C|32
5ZEP|1|B|C|33
5ZEP|1|B|G|34
*
5ZEP|1|B|C|48
5ZEP|1|B|C|49
5ZEP|1|B|C|50
5ZEP|1|B|G|51

Current chains

Chain B

5S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain P

50S ribosomal protein L18