IL_5ZEP_188

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5ZEP|1|a|U|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_188 not in the Motif Atlas

Geometric match to IL_8C3A_053

Geometric discrepancy: 0.3786

The information below is about IL_8C3A_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5ZEP|1|a|C|1432
5ZEP|1|a|C|1433
*
5ZEP|1|a|G|1436
5ZEP|1|a|U|1437
5ZEP|1|a|G|1438

Current chains

Chain a

16S rRNA

Nearby chains