IL_5ZET_018

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*UC

Length

5 nucleotides

Bulged bases

5ZET|1|A|G|684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_018 not in the Motif Atlas

Homologous match to IL_7A0S_012

Geometric discrepancy: 0.5997

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

5ZET|1|A|G|683
5ZET|1|A|G|684
5ZET|1|A|G|685
*
5ZET|1|A|U|780
5ZET|1|A|C|781

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15