IL_5ZET_024

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_024 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1051

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

5ZET|1|A|U|818
5ZET|1|A|G|819
5ZET|1|A|A|820
5ZET|1|A|A|821
5ZET|1|A|G|822
*
5ZET|1|A|U|839
5ZET|1|A|G|840
5ZET|1|A|G|841
5ZET|1|A|A|842
5ZET|1|A|G|843

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2