IL_5ZET_063

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_063 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3667

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5ZET|1|A|C|1694
5ZET|1|A|U|1695
5ZET|1|A|G|1696
5ZET|1|A|U|1697
5ZET|1|A|A|1698
5ZET|1|A|G|1699
*
5ZET|1|A|U|1735
5ZET|1|A|G|1736
5ZET|1|A|A|1737
5ZET|1|A|G|1738
5ZET|1|A|A|1739
5ZET|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains