IL_5ZET_071

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5ZET|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_071 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1014

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5ZET|1|A|C|1904
5ZET|1|A|G|1905
5ZET|1|A|U|1906
5ZET|1|A|A|1907
5ZET|1|A|A|1908
5ZET|1|A|C|1909
*
5ZET|1|A|G|1914
5ZET|1|A|G|1915
5ZET|1|A|A|1916
5ZET|1|A|G|1917
5ZET|1|A|A|1918
5ZET|1|A|A|1919
5ZET|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2