IL_5ZET_080

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_080 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2824

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZET|1|A|A|2073
5ZET|1|A|G|2074
5ZET|1|A|G|2075
5ZET|1|A|A|2076
5ZET|1|A|C|2077
5ZET|1|A|C|2078
*
5ZET|1|A|G|2105
5ZET|1|A|A|2106
5ZET|1|A|G|2107
5ZET|1|A|A|2108
5ZET|1|A|A|2109
5ZET|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains