IL_5ZET_118

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_118 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.236

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5ZET|1|B|G|6
5ZET|1|B|G|7
5ZET|1|B|C|8
5ZET|1|B|G|9
*
5ZET|1|B|C|108
5ZET|1|B|C|109
5ZET|1|B|G|110
5ZET|1|B|C|111

Current chains

Chain B

P-tRNAfMet

Nearby chains

Chain P

50S ribosomal protein L18

Chain X

50S ribosomal protein L27