IL_5ZET_124

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

5ZET|1|A|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_124 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.2417

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5ZET|1|A|U|1689
5ZET|1|A|A|1690
5ZET|1|A|A|1691
5ZET|1|A|G|1692
5ZET|1|A|C|1693
*
5ZET|1|A|G|1741
5ZET|1|A|U|1742
5ZET|1|A|G|1743
5ZET|1|A|A|1744
5ZET|1|A|U|1745
5ZET|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains