IL_5ZEU_019

3D structure

PDB id

5ZEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

5ZEU|1|a|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEU_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1491

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5ZEU|1|a|G|409
5ZEU|1|a|G|410
5ZEU|1|a|A|411
5ZEU|1|a|U|412
5ZEU|1|a|G|413
5ZEU|1|a|A|414
5ZEU|1|a|C|415
5ZEU|1|a|G|416
*
5ZEU|1|a|U|427
5ZEU|1|a|G|428
5ZEU|1|a|U|429
5ZEU|1|a|A|430
5ZEU|1|a|A|431
5ZEU|1|a|A|432
5ZEU|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4