IL_5ZWM_009

3D structure

PDB id

5ZWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZWM_009 not in the Motif Atlas

Homologous match to IL_5VSU_002

Geometric discrepancy: 0.5192

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5ZWM|1|F|C|68
5ZWM|1|F|C|69
5ZWM|1|F|U|70
*
5ZWM|1|I|A|11
5ZWM|1|I|C|12
5ZWM|1|I|G|13

Current chains

Chain F

U6 snRNA

Chain I

U4 snRNA

Nearby chains

Chain J

U4/U6 small nuclear ribonucleoprotein PRP3