IL_6AHD_002
3D structure
- PDB id
- 6AHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAUCGCAUA*UCCGU
- Length
- 15 nucleotides
- Bulged bases
- 6AHD|1|B|A|21, 6AHD|1|B|U|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6AHD|1|B|A|19
6AHD|1|B|G|20
6AHD|1|B|A|21
6AHD|1|B|U|22
6AHD|1|B|C|23
6AHD|1|B|G|24
6AHD|1|B|C|25
6AHD|1|B|A|26
6AHD|1|B|U|27
6AHD|1|B|A|28
*
6AHD|1|B|U|54
6AHD|1|B|C|55
6AHD|1|B|C|56
6AHD|1|B|G|57
6AHD|1|B|U|58
Current chains
- Chain B
- U5snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- 116 kDa U5 small nuclear ribonucleoprotein component
Coloring options: