IL_6AHD_007
3D structure
- PDB id
- 6AHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUCA*UCUG
- Length
- 9 nucleotides
- Bulged bases
- 6AHD|1|G|U|136
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AHD_007 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.3468
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
6AHD|1|G|U|134
6AHD|1|G|G|135
6AHD|1|G|U|136
6AHD|1|G|C|137
6AHD|1|G|A|138
*
6AHD|1|H|U|39
6AHD|1|H|C|40
6AHD|1|H|U|41
6AHD|1|H|G|42
Current chains
- Chain G
- pre-mRNA
- Chain H
- U2snRNA
Nearby chains
- Chain 1
- Splicing factor 3B subunit 1
- Chain 2
- SF3b145, Splicing factor 3B subunit 2
Coloring options: