IL_6AWB_020

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWB_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.4242

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6AWB|1|A|U|409
6AWB|1|A|G|410
6AWB|1|A|A|411
6AWB|1|A|A|412
6AWB|1|A|G|413
6AWB|1|A|A|414
6AWB|1|A|A|415
6AWB|1|A|G|416
*
6AWB|1|A|U|427
6AWB|1|A|G|428
6AWB|1|A|U|429
6AWB|1|A|A|430
6AWB|1|A|A|431
6AWB|1|A|A|432
6AWB|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4