IL_6AWB_025

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWB_025 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.379

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6AWB|1|A|C|511
6AWB|1|A|U|512
6AWB|1|A|C|513
*
6AWB|1|A|G|538
6AWB|1|A|A|539
6AWB|1|A|G|540

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain O

30S ribosomal protein S12