IL_6AZ4_002

3D structure

PDB id

6AZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

6AZ4|1|A|U|30

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_53448.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

11

Unit IDs

6AZ4|1|A|C|13
6AZ4|1|A|U|14
6AZ4|1|A|A|15
6AZ4|1|A|A|16
6AZ4|1|A|G|17
*
6AZ4|1|A|U|28
6AZ4|1|A|A|29
6AZ4|1|A|U|30
6AZ4|1|A|G|31

Current chains

Chain A

RNA (32-MER)

Nearby chains