IL_6B14_003

3D structure

PDB id

6B14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N

Experimental method

X-RAY DIFFRACTION

Resolution

1.64 Å

Loop

Sequence

GUG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B14_003 not in the Motif Atlas

Geometric match to IL_4KZD_003

Geometric discrepancy: 0.107

The information below is about IL_4KZD_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6B14|1|R|G|17
6B14|1|R|U|18
6B14|1|R|G|19
*
6B14|1|R|C|66
6B14|1|R|U|67
6B14|1|R|C|68

Current chains

Chain R

RNA (86-MER)

Nearby chains