IL_6BJX_001

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAAUU*AGCC

Length

9 nucleotides

Bulged bases

6BJX|1|A|U|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BJX_001 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3995

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

6BJX|1|A|G|103
6BJX|1|A|A|104
6BJX|1|A|A|105
6BJX|1|A|U|106
6BJX|1|A|U|107
*
6BJX|1|A|A|214
6BJX|1|A|G|215
6BJX|1|A|C|216
6BJX|1|A|C|217

Current chains

Chain A

Group I self-splicing intron P4-P6 domain

Nearby chains

Chain B

Group I self-splicing intron P4-P6 domain