IL_6BM2_001

3D structure

PDB id

6BM2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pol II elongation complex with an abasic lesion at i-1 position

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CTC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BM2|1|R|G|4
6BM2|1|R|A|5
6BM2|1|R|G|6
*
6BM2|1|T|DC|23
6BM2|1|T|DT|24
6BM2|1|T|DC|25

Current chains

Chain R

RNA (5'-R(*AP*UP*CP*AP*AP*GP*AP*GP*A)-3')

Chain T

DNA (5'-D(P*CP*AP*(3DR)P*CP*TP*CP*TP*TP*GP*AP*TP*G)-3')

Nearby chains

Chain A

DNA-directed RNA polymerase II subunit RPB1

Chain B

DNA-directed RNA polymerase II subunit RPB2