IL_6BOK_001

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

6BOK|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_001 not in the Motif Atlas

Homologous match to IL_4LFB_001

Geometric discrepancy: 0.0774

The information below is about IL_4LFB_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6BOK|1|A|U|30
6BOK|1|A|G|31
6BOK|1|A|A|32
*
6BOK|1|A|U|552
6BOK|1|A|A|553

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain LA

30S ribosomal protein S4

Chain TA

30S ribosomal protein S12