IL_6BOK_007

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6BOK|1|A|G|129|||B, 6BOK|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1591

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6BOK|1|A|U|129|||A
6BOK|1|A|G|129|||B
6BOK|1|A|A|130
6BOK|1|A|C|131
*
6BOK|1|A|G|231
6BOK|1|A|G|232

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S20

Chain XA

30S ribosomal protein S16

Chain YA

30S ribosomal protein S17