IL_6BOK_024

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_024 not in the Motif Atlas

Homologous match to IL_4LFB_024

Geometric discrepancy: 0.1388

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6BOK|1|A|G|594
6BOK|1|A|G|595
6BOK|1|A|C|596
*
6BOK|1|A|G|644
6BOK|1|A|C|645

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain PA

30S ribosomal protein S8

Chain YA

30S ribosomal protein S17