IL_6BOK_105

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6BOK|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_105 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2661

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6BOK|1|B|G|1087
6BOK|1|B|A|1088
6BOK|1|B|G|1089
6BOK|1|B|U|1090
6BOK|1|B|G|1091
*
6BOK|1|B|C|1100
6BOK|1|B|U|1101
6BOK|1|B|C|1102

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain GA

50S ribosomal protein L36