IL_6BOK_120

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_120 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1155

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6BOK|1|B|A|1469
6BOK|1|B|G|1470
6BOK|1|B|A|1471
6BOK|1|B|A|1472
6BOK|1|B|G|1473
*
6BOK|1|B|U|1520
6BOK|1|B|G|1521
6BOK|1|B|G|1522
6BOK|1|B|U|1523

Current chains

Chain B

23S ribosomal RNA

Nearby chains