3D structure

PDB id
6BOK (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
6BOK|1|B|A|1938, 6BOK|1|B|U|1944, 6BOK|1|B|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOK_137 not in the Motif Atlas
Homologous match to IL_7RQB_077
Geometric discrepancy: 0.0928
The information below is about IL_7RQB_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6BOK|1|B|C|1934
6BOK|1|B|G|1935
6BOK|1|B|A|1936
6BOK|1|B|A|1937
6BOK|1|B|A|1938
6BOK|1|B|5MU|1939
6BOK|1|B|U|1940
6BOK|1|B|C|1941
6BOK|1|B|5MC|1942
6BOK|1|B|U|1943
6BOK|1|B|U|1944
6BOK|1|B|G|1945
*
6BOK|1|B|C|1961
6BOK|1|B|5MC|1962
6BOK|1|B|U|1963
6BOK|1|B|G|1964

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain E
50S ribosomal protein L2
Chain GD
Peptide chain release factor 1

Coloring options:


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