IL_6BOK_172
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOK_172 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0655
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6BOK|1|C|C|71
6BOK|1|C|G|72
6BOK|1|C|A|73
6BOK|1|C|U|74
6BOK|1|C|G|75
6BOK|1|C|G|76
6BOK|1|C|U|77
6BOK|1|C|A|78
6BOK|1|C|C|79
*
6BOK|1|C|G|97
6BOK|1|C|G|98
6BOK|1|C|A|99
6BOK|1|C|G|100
6BOK|1|C|A|101
6BOK|1|C|G|102
6BOK|1|C|U|103
6BOK|1|C|A|104
6BOK|1|C|G|105
Current chains
- Chain C
- 5S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
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